Thanks for @arinc9 posting and u/sticktron for explaining this method for fellow jailbreaker, many users have confirmed it works, let's read with 3uTools about how to make Cydia works on iOS 10.3.x.

How to Use Cydia Eraser to Un-jailbreak Your iDevice?

Prerequisites

Cydia Eraser

Filza File Manager

Tutorial

Navigate to /Applications/Eraser.app/

Find Eraser_ file and delete it

Find Eraser file and rename it as Eraser_

Reboot and rejailbreak

Report any issue

We'll add solutions for issues as long as you report.

Getting cpp:131 error

Your hosts file is blocking Apple's OTA servers.

Navigate to /etc/

Find hosts file, rename it as hosts.old and try again.

Getting zip:444 error

That's a known issue with Cydia Eraser.

Kill the app from switcher and try again.

Device resprang instead of reset after the restore

It happened to my device, every app except system apps was white colored.

Go to Settings app and Erase All Content and Settings.